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got patch vs binary files
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On 2023/05/12 21:06:15 +0200, Omar Polo <op@omarpolo.com> wrote:
> back in february naddy reported that got patch choked on the perl
> update.
>
> https://marc.gameoftrees.org/thread/1675780522.55927_0.html
>
> The problem was two-fold:
> 1. the "Result too large" for very long lines
> 2. NUL bytes in the middle of the lines
>
> Here I'm adressing the most interesting one, the sencond. I'll handle
> the very long lines case next.
>
> got patch assumes lines can be encoded as strings, so embedded NUL
> bytes effectively truncates the line. diff below changes this
> assumption, by considering lines just binary strings LF-delimited.
>
> While doing this, I took the chance to ship some other minor changes.
>
> The type of the line (i.e. '+', '-' or ' ' aka context) now is a
> separate field instead of being encoded in the first byte of each
> line, this simplifies the various +1/-1 that were needed otherwise.
>
> I've renamed linecmp into lineq and made it boolean: it's simpler to
> write, to use and we'll never be interested in sorting lines anyway.
>
> One quirk is that I'm still allocating the space for a NUL terminator.
> This is not required, and in fact makes pushline() maybe not obvious,
> but it's useful for debugging so it's worth it I think.
>
> The diff is not committable as-is however. I had to disable a check
> in diff3 to allow got_merge_diff3 to proceed on binary files. I'm not
> sure what we want to do in for this, but I believe that even without
> the will to support "binary patches" most of the diff still makes
> sense, as it propagate lengths rather than recomputing strlen() here
> and there and avoids some extra useless allocations in got-read-patch.
>
>
> diff /home/op/w/got
> commit - ba0bed23e515b14cd3fe877c6847785c8c29971e
> path + /home/op/w/got
> blob - 5cd79150cc6476f78c90b997d76b00eaa99fc341
> file + lib/diff3.c
> --- lib/diff3.c
> +++ lib/diff3.c
> @@ -231,6 +231,7 @@ diffreg(BUF **d, const char *path1, const char *path2,
> if (err)
> goto done;
>
> +#if 0
> if (diffreg_result) {
> struct diff_result *diff_result = diffreg_result->result;
> int atomizer_flags = (diff_result->left->atomizer_flags |
> @@ -240,6 +241,7 @@ diffreg(BUF **d, const char *path1, const char *path2,
> goto done;
> }
> }
> +#endif
>
> err = got_diffreg_output(NULL, NULL, diffreg_result, 1, 1, "", "",
> GOT_DIFF_OUTPUT_PLAIN, 0, outfile);
> blob - 9f524a6bfc0deae40498090e43fe7f9238eb4e64
> file + lib/patch.c
> --- lib/patch.c
> +++ lib/patch.c
> @@ -59,6 +59,12 @@ struct got_patch_hunk {
> #define MIN(a, b) ((a) < (b) ? (a) : (b))
> #endif
>
> +struct got_patch_line {
> + char mode;
> + char *line;
> + size_t len;
> +};
> +
> struct got_patch_hunk {
> STAILQ_ENTRY(got_patch_hunk) entries;
> const struct got_error *err;
> @@ -72,7 +78,7 @@ struct got_patch_hunk {
> int new_lines;
> size_t len;
> size_t cap;
> - char **lines;
> + struct got_patch_line *lines;
> };
>
> STAILQ_HEAD(got_patch_hunk_head, got_patch_hunk);
> @@ -128,7 +134,7 @@ patch_free(struct got_patch *p)
> STAILQ_REMOVE_HEAD(&p->head, entries);
>
> for (i = 0; i < h->len; ++i)
> - free(h->lines[i]);
> + free(h->lines[i].line);
> free(h->lines);
> free(h);
> }
> @@ -141,7 +147,7 @@ pushline(struct got_patch_hunk *h, const char *line)
> }
>
> static const struct got_error *
> -pushline(struct got_patch_hunk *h, const char *line)
> +pushline(struct got_patch_hunk *h, const char *line, size_t len)
> {
> void *t;
> size_t newcap;
> @@ -157,10 +163,14 @@ pushline(struct got_patch_hunk *h, const char *line)
> h->cap = newcap;
> }
>
> - if ((t = strdup(line)) == NULL)
> - return got_error_from_errno("strdup");
> + if ((t = malloc(len - 1)) == NULL)
> + return got_error_from_errno("malloc");
> + memcpy(t, line + 1, len - 1); /* skip the line type */
>
> - h->lines[h->len++] = t;
> + h->lines[h->len].mode = *line;
> + h->lines[h->len].line = t;
> + h->lines[h->len].len = len - 2; /* skip line type and trailing NUL */
> + h->len++;
> return NULL;
> }
>
> @@ -301,7 +311,7 @@ recv_patch(struct imsgbuf *ibuf, int *done, struct got
> }
>
> if (*t != '\\')
> - err = pushline(h, t);
> + err = pushline(h, t, datalen);
> else if (lastmode == '-')
> h->old_nonl = 1;
> else if (lastmode == '+')
> @@ -351,10 +361,10 @@ reverse_patch(struct got_patch *p)
> h->new_nonl = tmp;
>
> for (i = 0; i < h->len; ++i) {
> - if (*h->lines[i] == '+')
> - *h->lines[i] = '-';
> - else if (*h->lines[i] == '-')
> - *h->lines[i] = '+';
> + if (h->lines[i].mode == '+')
> + h->lines[i].mode = '-';
> + else if (h->lines[i].mode == '-')
> + h->lines[i].mode = '+';
> }
> }
> }
> @@ -392,14 +402,15 @@ static int linecmp(const char *, const char *, int *);
> return NULL;
> }
>
> -static int linecmp(const char *, const char *, int *);
> +static int lineq(struct got_patch_line *, const char *, size_t, int *);
>
> static const struct got_error *
> locate_hunk(FILE *orig, struct got_patch_hunk *h, off_t *pos, int *lineno)
> {
> const struct got_error *err = NULL;
> + struct got_patch_line *l = &h->lines[0];
> char *line = NULL;
> - char mode = *h->lines[0];
> + char mode = l->mode;
> size_t linesize = 0;
> ssize_t linelen;
> off_t match = -1;
> @@ -414,12 +425,10 @@ locate_hunk(FILE *orig, struct got_patch_hunk *h, off_
> err = got_error(GOT_ERR_HUNK_FAILED);
> break;
> }
> - if (line[linelen - 1] == '\n')
> - line[linelen - 1] = '\0';
> (*lineno)++;
>
> - if ((mode == ' ' && !linecmp(h->lines[0] + 1, line, &mangled)) ||
> - (mode == '-' && !linecmp(h->lines[0] + 1, line, &mangled)) ||
> + if ((mode == ' ' && lineq(l, line, linelen, &mangled)) ||
> + (mode == '-' && lineq(l, line, linelen, &mangled)) ||
> (mode == '+' && *lineno == h->old_from)) {
> match = ftello(orig);
> if (match == -1) {
> @@ -449,27 +458,34 @@ linecmp(const char *a, const char *b, int *mangled)
> }
>
> static int
> -linecmp(const char *a, const char *b, int *mangled)
> +lineq(struct got_patch_line *l, const char *b, size_t len, int *mangled)
> {
> - int c;
> + char *a = l->line;
> + size_t i, j;
>
> + if (b[len - 1] == '\n')
> + len--;
> +
> *mangled = 0;
> - c = strcmp(a, b);
> - if (c == 0)
> - return c;
> + if (l->len == len && !memcmp(a, b, len))
> + return 1;
>
> *mangled = 1;
> +
> + i = j = 0;
> for (;;) {
> - while (*a == '\t' || *a == ' ' || *a == '\f')
> - a++;
> - while (*b == '\t' || *b == ' ' || *b == '\f')
> - b++;
> - if (*a == '\0' || *a != *b)
> + while (i < l->len &&
> + (a[i] == '\t' || a[i] == ' ' || a[i] == '\f'))
> + i++;
> + while (j < len &&
> + (b[j] == '\t' || b[j] == ' ' || b[j] == '\f'))
> + j++;
> + if (i == l->len || j == len || a[i] != b[j])
> break;
> - a++, b++;
> + i++, j++;
> }
>
> - return *a - *b;
> + return (i == l->len && j == len);
> }
>
> static const struct got_error *
> @@ -482,7 +498,7 @@ test_hunk(FILE *orig, struct got_patch_hunk *h)
> int mangled;
>
> for (i = 0; i < h->len; ++i) {
> - switch (*h->lines[i]) {
> + switch (h->lines[i].mode) {
> case '+':
> continue;
> case ' ':
> @@ -496,9 +512,7 @@ test_hunk(FILE *orig, struct got_patch_hunk *h)
> GOT_ERR_HUNK_FAILED);
> goto done;
> }
> - if (line[linelen - 1] == '\n')
> - line[linelen - 1] = '\0';
> - if (linecmp(h->lines[i] + 1, line, &mangled)) {
> + if (!lineq(&h->lines[i], line, linelen, &mangled)) {
> err = got_error(GOT_ERR_HUNK_FAILED);
> goto done;
> }
> @@ -522,13 +536,14 @@ apply_hunk(FILE *orig, FILE *tmp, struct got_patch_hun
> size_t linesize = 0, i, new = 0;
> char *line = NULL;
> char mode;
> + size_t l;
> ssize_t linelen;
>
> if (orig != NULL && fseeko(orig, from, SEEK_SET) == -1)
> return got_error_from_errno("fseeko");
>
> for (i = 0; i < h->len; ++i) {
> - switch (mode = *h->lines[i]) {
> + switch (mode = h->lines[i].mode) {
> case '-':
> case ' ':
> (*lineno)++;
> @@ -541,18 +556,24 @@ apply_hunk(FILE *orig, FILE *tmp, struct got_patch_hun
> if (line[linelen - 1] == '\n')
> line[linelen - 1] = '\0';
> t = line;
> - } else
> - t = h->lines[i] + 1;
> + l = linelen - 1;
> + } else {
> + t = h->lines[i].line;
> + l = h->lines[i].len;
> + }
> if (mode == '-')
> continue;
> - if (fprintf(tmp, "%s\n", t) < 0) {
> + if (fwrite(t, 1, l, tmp) != l ||
> + fputc('\n', tmp) == EOF) {
> err = got_error_from_errno("fprintf");
> goto done;
> }
> break;
> case '+':
> new++;
> - if (fprintf(tmp, "%s", h->lines[i] + 1) < 0) {
> + t = h->lines[i].line;
> + l = h->lines[i].len;
> + if (fwrite(t, 1, l, tmp) != l) {
> err = got_error_from_errno("fprintf");
> goto done;
> }
> blob - a5fe8c2470856e960745214cc536ddbc804c7ef0
> file + libexec/got-read-patch/got-read-patch.c
> --- libexec/got-read-patch/got-read-patch.c
> +++ libexec/got-read-patch/got-read-patch.c
> @@ -445,23 +445,29 @@ send_line(const char *line)
> }
>
> static const struct got_error *
> -send_line(const char *line)
> +send_line(const char *line, size_t len)
> {
> static const struct got_error *err = NULL;
> - char *p = NULL;
> + struct iovec iov[2];
> + int iovcnt = 0;
>
> + memset(&iov, 0, sizeof(iov));
> +
> if (*line != '+' && *line != '-' && *line != ' ' && *line != '\\') {
> - if (asprintf(&p, " %s", line) == -1)
> - return got_error_from_errno("asprintf");
> - line = p;
> + iov[iovcnt].iov_base = (void *)" ";
> + iov[iovcnt].iov_len = 1;
> + iovcnt++;
> }
>
> - if (imsg_compose(&ibuf, GOT_IMSG_PATCH_LINE, 0, 0, -1,
> - line, strlen(line) + 1) == -1)
> + iov[iovcnt].iov_base = (void *)line;
> + iov[iovcnt].iov_len = len;
> + iovcnt++;
> +
> + if (imsg_composev(&ibuf, GOT_IMSG_PATCH_LINE, 0, 0, -1,
> + iov, iovcnt) == -1)
> err = got_error_from_errno(
> "imsg_compose GOT_IMSG_PATCH_LINE");
>
> - free(p);
> return err;
> }
>
> @@ -478,7 +484,7 @@ peek_special_line(FILE *fp)
> }
>
> if (ch == '\\') {
> - err = send_line("\\");
> + err = send_line("\\", 2);
> if (err)
> return err;
> }
> @@ -568,7 +574,7 @@ parse_hunk(FILE *fp, int *done)
> goto done;
> }
>
> - err = send_line(line);
> + err = send_line(line, linelen);
> if (err)
> goto done;
>
> blob - 17db471e5c3aa81e0eb9233b406861cdccd08fcd
> file + regress/cmdline/patch.sh
> --- regress/cmdline/patch.sh
> +++ regress/cmdline/patch.sh
> @@ -1956,6 +1956,57 @@ test_parseargs "$@"
> test_done $testroot 0
> }
>
> +test_patch_binary() {
> + local testroot=`test_init patch_binary`
> +
> + if ! got checkout "$testroot/repo" "$testroot/wt" >/dev/null; then
> + test_done "$testroot" $ret
> + return 1
> + fi
> +
> + printf 'e\0ta' > $testroot/wt/eta
> + (cd "$testroot/wt" && got add eta && got commit -m '+eta') >/dev/null
> + ret=$?
> + if [ $ret -ne 0 ]; then
> + echo "got add failed unexpectedly" >&2
> + test_done "$testroot" $ret
> + return 1
> + fi
> +
> + printf 'et\0a' | tee "$testroot/wt/eta.expected" > $testroot/wt/eta
> +
> + (cd "$testroot/wt" && got diff -a > patch && got revert eta) >/dev/null
> + ret=$?
> + if [ $ret -ne 0 ]; then
> + echo "got diff or revert failed unexpectedly" >&2
> + test_done "$testroot" $ret
> + return 1
> + fi
> +
> + (cd "$testroot/wt" && got patch <patch) > $testroot/stdout
> + ret=$?
> + if [ $ret -ne 0 ]; then
> + echo "got patch failed unexpectedly" >&2
> + test_done "$testroot" $ret
> + return 1
> + fi
> +
> + echo 'G eta' > $testroot/stdout.expected
> + if ! cmp -s "$testroot/stdout.expected" "$testroot/stdout"; then
> + diff -u "$testroot/stdout.expected" "$testroot/stdout"
> + test_done "$testroot" 1
> + return 1
> + fi
> +
> + if ! cmp -s "$testroot/wt/eta.expected" "$testroot/wt/eta"; then
> + diff -u "$testroot/wt/eta.expected" "$testroot/wt/eta"
> + test_done "$testroot" 1
> + return 1
> + fi
> +
> + test_done "$testroot" 0
> +}
> +
> test_parseargs "$@"
> run_test test_patch_basic
> run_test test_patch_dont_apply
> @@ -1986,3 +2037,4 @@ run_test test_patch_remove_binary_file
> run_test test_patch_newfile_xbit_git_diff
> run_test test_patch_umask
> run_test test_patch_remove_binary_file
> +run_test test_patch_binary
got patch vs binary files